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Sep 25, 2008 3:38:01 PM

richi
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Joined: Sep 25, 2008
Posts: 1
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Software caused connection abort: socket write error

i´m loading an owl ontology with the next size: 319MB into MySQL database and i get this error.

action.InitServlet] - Load: comp.cfg
24-sep-2008 12:30:21 info.aduna.lang.service.ServiceRegistry <init>
INFO: Registered service class org.openrdf.rio.n3.N3ParserFactory
24-sep-2008 12:30:22 info.aduna.lang.service.ServiceRegistry <init>
INFO: Registered service class org.openrdf.rio.ntriples.NTriplesParserFactory
24-sep-2008 12:30:22 info.aduna.lang.service.ServiceRegistry <init>
INFO: Registered service class org.openrdf.rio.rdfxml.RDFXMLParserFactory
24-sep-2008 12:30:22 info.aduna.lang.service.ServiceRegistry <init>
INFO: Registered service class org.openrdf.rio.trig.TriGParserFactory
24-sep-2008 12:30:22 info.aduna.lang.service.ServiceRegistry <init>
INFO: Registered service class org.openrdf.rio.trix.TriXParserFactory
24-sep-2008 12:30:22 info.aduna.lang.service.ServiceRegistry <init>
INFO: Registered service class org.openrdf.rio.turtle.TurtleParserFactory
25-sep-2008 0:42:26 org.openrdf.sail.rdbms.schema.RdbmsTable executeUpdate
ADVERTENCIA: Communications link failure due to underlying exception:

** BEGIN NESTED EXCEPTION **

java.net.SocketException
MESSAGE: Software caused connection abort: socket write error

STACKTRACE:

java.net.SocketException: Software caused connection abort: socket write error
at java.net.SocketOutputStream.socketWrite0(Native Method)
at java.net.SocketOutputStream.socketWrite(SocketOutputStream.java:92)
at java.net.SocketOutputStream.write(SocketOutputStream.java:136)
at java.io.BufferedOutputStream.flushBuffer(BufferedOutputStream.java:65)
at java.io.BufferedOutputStream.flush(BufferedOutputStream.java:123)
at com.mysql.jdbc.MysqlIO.send(MysqlIO.java:2692)
at com.mysql.jdbc.MysqlIO.send(MysqlIO.java:2621)
at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:1552)
at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:1666)
at com.mysql.jdbc.Connection.execSQL(Connection.java:2994)
at com.mysql.jdbc.PreparedStatement.executeInternal(PreparedStatement.java:936)
at com.mysql.jdbc.PreparedStatement.executeUpdate(PreparedStatement.java:1166)
at com.mysql.jdbc.PreparedStatement.executeUpdate(PreparedStatement.java:1082)
at com.mysql.jdbc.PreparedStatement.executeUpdate(PreparedStatement.java:1067)
at org.apache.commons.dbcp.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:102)
at org.openrdf.sail.rdbms.schema.RdbmsTable.executeUpdate(RdbmsTable.java:139)
at org.openrdf.sail.rdbms.schema.NamespacesTable.insert(NamespacesTable.java:80)
at org.openrdf.sail.rdbms.managers.NamespaceManager.create(NamespaceManager.java:105)
at org.openrdf.sail.rdbms.managers.NamespaceManager.findNamespace(NamespaceManager.java:74)
at org.openrdf.sail.rdbms.managers.NamespaceManager.setPrefix(NamespaceManager.java:114)
at org.openrdf.sail.rdbms.RdbmsConnection.setNamespaceInternal(RdbmsConnection.java:256)
at org.openrdf.sail.helpers.SailConnectionBase.setNamespace(SailConnectionBase.java:389)
at org.openrdf.repository.sail.SailRepositoryConnection.setNamespace(SailRepositoryConnection.java:273)
at org.openrdf.repository.util.RDFInserter.endRDF(RDFInserter.java:146)
at org.openrdf.rio.rdfxml.RDFXMLParser.parse(RDFXMLParser.java:261)
at org.openrdf.rio.rdfxml.RDFXMLParser.parse(RDFXMLParser.java:209)
at org.openrdf.repository.base.RepositoryConnectionBase.addInputStreamOrReader(RepositoryConnectionBase.java:303)
at org.openrdf.repository.base.RepositoryConnectionBase.add(RepositoryConnectionBase.java:253)
at org.openrdf.repository.base.RepositoryConnectionBase.add(RepositoryConnectionBase.java:226)
at com.isoco.ontology.sesame.loader.SesameLoader.loadOntology(SesameLoader.java:172)
at com.isoco.ontology.datastore.DefaultOntologyRepositoryImpl.initialize(DefaultOntologyRepositoryImpl.java:66)
at com.isoco.ontology.datastore.DefaultOntologyRepositoryImpl.<init>(DefaultOntologyRepositoryImpl.java:78)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:494)
at com.isoco.ontology.factory.Factory._createObject(Factory.java:310)
at com.isoco.ontology.factory.Factory._createFactory(Factory.java:335)
at com.isoco.ontology.factory.Factory.createOntologyRepository(Factory.java:184)
at com.isoco.ontology.OntologyRepositoryInstance.init(OntologyRepositoryInstance.java:49)
at com.isoco.prototipo.struts.action.InitServlet.init(InitServlet.java:57)
at javax.servlet.GenericServlet.init(GenericServlet.java:212)
at org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1161)
at org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:981)
at org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:4044)
at org.apache.catalina.core.StandardContext.start(StandardContext.java:4350)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:761)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:741)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:525)
at org.apache.catalina.startup.HostConfig.deployDirectory(HostConfig.java:920)
at org.apache.catalina.startup.HostConfig.deployDirectories(HostConfig.java:883)
at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:492)
at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1138)
at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:311)
at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:120)
at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1023)
at org.apache.catalina.core.StandardHost.start(StandardHost.java:719)
at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1015)
at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:443)
at org.apache.catalina.core.StandardService.start(StandardService.java:448)
at org.apache.catalina.core.StandardServer.start(StandardServer.java:710)
at org.apache.catalina.startup.Catalina.start(Catalina.java:552)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:585)
at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:288)
at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:413)


** END NESTED EXCEPTION **



Last packet sent to the server was 16 ms ago.
INSERT INTO NAMESPACE_PREFIXES (prefix, namespace) VALUES (?, ?)

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